RangedDataList-class {IRanges} | R Documentation |
IMPORTANT NOTE: Starting with BioC 2.12, the use of RangedData
and RangedDataList
objects is discouraged in favor of
GRanges
and
GRangesList
objects (those classes
are defined in the GenomicRanges package).
A formal list of RangedData
objects. Extends and inherits all its methods from
List
. One use case is to group together
all of the samples from an experiment generating data on ranges.
RangedDataList(...)
: Concatenates the
RangedData
objects in ...
into a new RangedDataList
.
stack(x, index.var = "name")
: Concantenates the elements
of x
into a RangedData
, with a column
named by index.var
that groups the records by their original
element in x
.
Michael Lawrence
RangedData
, the element type of this
List
.
ranges <- IRanges(c(1,2,3),c(4,5,6)) a <- RangedData(IRanges(c(1,2,3),c(4,5,6)), score = c(10L, 2L, NA)) b <- RangedData(IRanges(c(1,2,4),c(4,7,5)), score = c(3L, 5L, 7L)) RangedDataList(sample1 = a, sample2 = b)