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Installation on MacOS

Simply download and install the MacOS drag-and-drop installer for your system from http://www.OpenMS.de .

To use TOPP as regular apps in your shell just add the following lines to your ~/.profile file. Please adapt the first line to point to the folder where you installed OpenMS (e.g., /Applications/OpenMS-2.0.0)

export OPENMS_TOPP_PATH=<OpenMS-PATH>
source ${OPENMS_TOPP_PATH}/.TOPP_bash_profile

Known Issues:


There is a known bug with running Java based thirdparty tools (like MSGFPlusAdapter and LuciphorAdapter) from within TOPPAS.app. Please run the TOPPAS.app from within the Terminal.app (e.g. with the open command) to get access to the path where Java is located (which is usually present in the PATH of your Terminal). Advanced users can set this path in the Info.plist of/inside the TOPPAS.app.


OpenMS / TOPP release 2.1.0 Documentation generated on Sat Apr 8 2017 21:05:40 using doxygen 1.8.13