This is the complete list of members for RNPxlSearch, including all inherited members.
getAllFeasibleFragmentAdducts_(const RNPxlModificationMassesResult &precursor_adducts, const PrecursorToFragmentAdductMapType &precursor_to_fragment_adducts) | RNPxlSearch | inlineprotected |
getFeasibleFragmentAdducts_(const String &exp_pc_adduct, const String &exp_pc_formula, const PrecursorToFragmentAdductMapType &precursor_to_fragment_adducts) | RNPxlSearch | inlineprotected |
getModifications_(StringList modNames) | RNPxlSearch | inlineprotected |
getPrecursorToFragmentAdducts_(StringList fragment_adducts) | RNPxlSearch | inlineprotected |
main_(int, const char **) | RNPxlSearch | inlineprotected |
normalizeAdductName_(String &name) | RNPxlSearch | inlineprotected |
postProcessHits_(const PeakMap &exp, vector< vector< AnnotatedHit > > &annotated_hits, vector< ProteinIdentification > &protein_ids, vector< PeptideIdentification > &peptide_ids, Size top_hits, const RNPxlModificationMassesResult &mm, const vector< ResidueModification > &fixed_modifications, const vector< ResidueModification > &variable_modifications, Size max_variable_mods_per_peptide) | RNPxlSearch | inlineprotected |
postScoreHits_(const PeakMap &exp, vector< vector< AnnotatedHit > > &annotated_hits, Size top_hits, const RNPxlModificationMassesResult &mm, const vector< ResidueModification > &fixed_modifications, const vector< ResidueModification > &variable_modifications, Size max_variable_mods_per_peptide, TheoreticalSpectrumGenerator spectrum_generator, double fragment_mass_tolerance, bool fragment_mass_tolerance_unit_ppm, const map< String, vector< FragmentAdductDefinition_ > > &all_feasible_fragment_adducts) | RNPxlSearch | inlineprotected |
PrecursorToFragmentAdductMapType typedef | RNPxlSearch | protected |
preprocessSpectra_(PeakMap &exp, double fragment_mass_tolerance, bool fragment_mass_tolerance_unit_ppm, bool single_charge_spectra, bool annotate_charge=false) | RNPxlSearch | inlineprotected |
registerOptionsAndFlags_() | RNPxlSearch | inlineprotected |
RNPxlSearch() | RNPxlSearch | inline |