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RNPxlSearch Member List

This is the complete list of members for RNPxlSearch, including all inherited members.

getAllFeasibleFragmentAdducts_(const RNPxlModificationMassesResult &precursor_adducts, const PrecursorToFragmentAdductMapType &precursor_to_fragment_adducts)RNPxlSearchinlineprotected
getFeasibleFragmentAdducts_(const String &exp_pc_adduct, const String &exp_pc_formula, const PrecursorToFragmentAdductMapType &precursor_to_fragment_adducts)RNPxlSearchinlineprotected
getModifications_(StringList modNames)RNPxlSearchinlineprotected
getPrecursorToFragmentAdducts_(StringList fragment_adducts)RNPxlSearchinlineprotected
main_(int, const char **)RNPxlSearchinlineprotected
normalizeAdductName_(String &name)RNPxlSearchinlineprotected
postProcessHits_(const PeakMap &exp, vector< vector< AnnotatedHit > > &annotated_hits, vector< ProteinIdentification > &protein_ids, vector< PeptideIdentification > &peptide_ids, Size top_hits, const RNPxlModificationMassesResult &mm, const vector< ResidueModification > &fixed_modifications, const vector< ResidueModification > &variable_modifications, Size max_variable_mods_per_peptide)RNPxlSearchinlineprotected
postScoreHits_(const PeakMap &exp, vector< vector< AnnotatedHit > > &annotated_hits, Size top_hits, const RNPxlModificationMassesResult &mm, const vector< ResidueModification > &fixed_modifications, const vector< ResidueModification > &variable_modifications, Size max_variable_mods_per_peptide, TheoreticalSpectrumGenerator spectrum_generator, double fragment_mass_tolerance, bool fragment_mass_tolerance_unit_ppm, const map< String, vector< FragmentAdductDefinition_ > > &all_feasible_fragment_adducts)RNPxlSearchinlineprotected
PrecursorToFragmentAdductMapType typedefRNPxlSearchprotected
preprocessSpectra_(PeakMap &exp, double fragment_mass_tolerance, bool fragment_mass_tolerance_unit_ppm, bool single_charge_spectra, bool annotate_charge=false)RNPxlSearchinlineprotected
registerOptionsAndFlags_()RNPxlSearchinlineprotected
RNPxlSearch()RNPxlSearchinline

OpenMS / TOPP release 2.2.0 Documentation generated on Wed Jul 12 2017 13:02:03 using doxygen 1.8.13