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TargetedFileConverter

Converts different transition files for targeted proteomics and metabolomics analysis.

Can convert multiple formats to and from TraML (standardized transition format). It supports the OpenSWATH TSV format as well as the PQP format for transitions.

The OpenSWATH transition TSV files need to have the following headers, all fields need to be separated by tabs:

Remarks:

The command line parameters of this tool are:

INI file documentation of this tool:


OpenMS / TOPP release 2.2.0 Documentation generated on Wed Jul 12 2017 13:02:03 using doxygen 1.8.13